3.5 Cell Asymmetry, Membrane Vesicles, and Extensions
Do dividing bacteria produce symmetrical offspring? Even superficially symmetrical bacilli such as Escherichia coli show underlying chemical and physical asymmetry, such as possession of a chemoreceptor array at the “forward” pole. Other species, such as Caulobacter crescentus, develop different structures at either pole, and their cell division generates two different cell types. And many kinds of bacteria extend their cytoplasm in surprising ways, by forming extracellular membrane vesicles and extensions that may interact with other cells. Such cell extensions complicate the very definition of an individual cell.
Bacterial Cell Differentiation
Bacteria whose poles have different structures generate two different forms of progeny. The wetland bacterium Caulobacter crescentus has one plain pole and one pole with either a flagellum or a cytoplasmic extension called a stalk (Fig. 3.30). A flagellated cell (also known as a swarmer cell) swims freely in an aqueous habitat, such as a pond or a sewage bed. After swimming for about half an hour, if the bacterium finds a place with enough nutrients, the cell sheds its flagellum and replaces it with a stalk. The stalked cell attaches to sediment and then immediately starts to replicate its DNA and divides, producing a flagellated daughter cell, as well as a daughter cell containing the original stalk.
How does C. crescentus organize itself to produce two different cell types, each with a different organelle at one pole? The process is a rudimentary form of cell differentiation, comparable to the differentiation processes that animal cells undergo in the embryo. The C. crescentus life cycle is governed by regulator proteins such as TipN, studied by students of Christine Jacobs-Wagner at Yale University. Mutants lacking TipN make serious mistakes in development. Instead of making a single flagellum at the correct cell pole, the cell makes multiple flagella at various locations, even on the stalk (Fig. 3.31A). Jacobs-Wagner proposed that TipN is a landmark protein that correctly marks the site of a new cell pole and directs the polar placement of flagella.
Figure 3.31B shows cells expressing TipN fused to the fluorescent protein GFP, which is then detected by fluorescence microscopy. (A gene fusion expresses fused proteins that fluoresce but may still perform the original protein’s function, as shown in Figure 2.29.) The fluorescent fusion protein TipN-GFP localizes to the cell pole opposite the stalk. As the cell prepares to divide, TipN leaves the pole, delocalizing around the cell. Eventually, the TipN protein relocalizes at the septum, where the new poles appear.
Cell development involves many such proteins working together. Figure 3.32 shows how TipN interacts with two other polar proteins: the flagellar marker PodJ, and the stalk marker DivJ. Each young cell (swarmer cell at top of cycle) has a new pole containing TipN. To prepare for cell division, the swarmer loses its flagellum. The flagellar pole then grows a stalk, with a holdfast for the cell to attach in a favorable environment. PodJ now migrates from the stalk pole to the opposite pole with TipN.
The stalk marker DivJ is now produced at the stalk pole, where PodJ was previously. As the stalked cell grows, TipN proteins delocalize around the cell. Then TipN localizes again at the middle, where the cell septates and divides. Once division is complete, TipN is concentrated at both new poles. The pole containing PodJ now grows a flagellum. The new flagellated cell is ready to find a new favorable environment to form a stalk and settle. Overall, throughout the cycle, a series of polar proteins localize and delocalize to define the polar functions.
Thought Question
3.10Figure 3.31 presents data from an experiment that allows the function of the TipN protein of Caulobacter to be visualized by microscopy. Can you propose an experiment with mutant strains of Caulobacter to test the hypothesis that one of the proteins shown in Figure 3.32 is required for one of the cell changes shown?
ANSWER ANSWER
The diagram of Figure 3.32 proposes that PodJ protein is required for a pole to develop a flagellum. Suppose we construct a mutant strain with a deletion of the gene podJ. This podJ mutant fails to express PodJ protein. When the podJ mutant is supplied with nutrients, the stalked cells should grow and fission, but the progeny from the plain pole should fail to grow a flagellum. The stalked progeny will continue to divide, producing a stalked cell and a cell with plain poles, lacking flagellum or stalk. Other results are possible, but the result described would be consistent with a requirement of PodJ for flagellar development.
Growth Asymmetry and Polar Aging
Does an apparently symmetrical cell such as E. coli actually possess two different polar forms? In fact, cell division generates daughter cells with chemically different poles (Fig. 3.33). Each cell starts out with one “old” pole (red in the figure) and one “new” pole (blue) where the parental cell septated. As the next cell divides, two daughter cells form, each with another “new” pole. But meanwhile, the “old” poles continue to age. With each generation, the polar cell wall material degrades slightly, increasing the chance of cell lysis. In a population of E. coli under environmental stress, at each cell division some members of the population die—of polar old age.
The cause of polar aging in stressed E. coli is the preferential accumulation of protein aggregates, which are nonfunctional and cannot be unfolded or degraded. For unknown reasons, proteins aggregate more frequently under a stressful condition, such as low pH or the presence of an antibiotic. Proteins damaged by a stressful condition are packed away in the cell’s older pole, allowing the new-pole cells to remain intact and grow faster. This asymmetrical cell provisioning may represent a form of “altruism” in which the older half cell promotes faster growth of the younger half cell.
Yet other kinds of cells grow by extending one pole only. The actinomycete Corynebacterium glutamicum, a soil bacterium useful for industrial production, positions its replisome at one cell pole. As DNA replication begins, a second replisome moves to the opposite pole, while new cell wall forms at the poles. In the next generation, the opposite pole possesses the replisome and undergoes extension. Unequal or unipolar cell extension is common among actinomycetes and mycobacteria, such as Mycobacterium tuberculosis.
Why does polar aging matter? One consequence of polar aging is that cells of different polar ages may differ in their resistance to antibiotics. This phenomenon could cause problems for antibiotic therapy. In M. tuberculosis, alternate polar aging generates variable resistance to antibiotics. The result may give tuberculosis bacteria the opportunity to “try out” resistance to various antibiotics applied in chemotherapy.
An extreme form of asymmetrical growth is endospore formation by Firmicutes such as Bacillus and Clostridium species. An endospore is an inert but viable cell form, having no active metabolism but capable of germination under the right conditions. Under starvation, desiccation, or other stress conditions, a bacterium can undergo an asymmetrical cell division to develop an endospore at one end. Endospore formation requires an extreme form of cellular altruism, in which the mother cell sacrifices itself for the spore-forming cell. The process generates an endospore capable of remaining dormant but viable for thousands of years.
Note: Endospore formation is covered in detail in Section 4.6.
Membrane Vesicles
Our concept of the cell assumes a defined boundary of membrane that encloses the cell’s contents and separates them from the external space. The cell’s cytoplasm is a precious limited resource. Yet surprisingly, isolated microbial cells continually export bits of cytoplasm in membrane vesicles. Some kinds of microbes share their materials with other cells—even cells of other species—via intercellular nanotubes. How does this cytoplasmic sharing serve the cell?
Membrane vesicles carry proteins and nucleic acids. An example of cytoplasmic export via membrane vesicles in the marine cyanobacterium Prochlorococcus was documented by Sallie Chisholm at the Massachusetts Institute of Technology. Prochlorococcus is one of the smallest yet most abundant phototrophs in Earth’s oceans, having a global population estimated at 3 × 1027 cells, which perform 20% of all photosynthesis in our oceans. Because Prochlorococcus cells are so small and their nutrients so scarce, it is remarkable that these tiny cells release their cytoplasm by pinching off vesicles (Fig. 3.34). Chisholm and her postdoctoral fellow analyzed these vesicles by ultracentrifugation (discussed in Section 3.1) and biochemical assays of their contents. The vesicles were found to contain diverse proteins, RNA molecules, and even fragments of DNA.
What functions are served by vesicle production that outweigh the loss of precious resources? Chisholm finds evidence for several possibilities:
Attraction of partner heterotrophs. Heterotrophic bacteria attracted by released carbon sources consume the excess oxygen and reactive oxygen species (ROS) produced by cyanobacterial photosynthesis. Cyanobacteria require heterotrophic partners for optimal growth.
Phage decoys. Bacteriophages readily infect Prochlorococcus and deplete its populations. But the bacterial membrane vesicles possess envelope receptors for phages, which can trap the phages and prevent them from infecting cells.
DNA transfer. The DNA released by Prochlorococcus may provide useful genetic traits for other members of the population as a form of horizontal gene transfer.
Another system in which membrane vesicles are shared is that of human gut bacteria such as Bacteroides and related anaerobes. One way the gut environment differs from the open ocean is in the abundance of nutrients available. In the gut, many anaerobes release vesicles of partly digested complex polysaccharides for further catabolism by other species. Often, both community members benefit as a result. Gut microbial interactions are discussed further in Chapter 21.
Membrane Extensions and Nanotubes
From the observations of the early microscopists of the nineteenth century, most bacteria were thought to have relatively simple shapes such as rods or spheres. But cryo-electron microscopy revealed surprisingly delicate extensions of the cell or outer membranes, such as filaments and “pearling” chains of vesicles. What is the function of these cell extensions? In some cases, cell extensions expand the cell’s reach for scarce nutrients (see Chapters 4 and 18). The purpose of other membrane extensions remains unclear, but exciting discovery continues.
Some bacteria and archaea can form membrane extensions that merge directly with the membranes of neighboring cells. Sigal Ben-Yehuda and students at the Hebrew University of Jerusalem revealed such extensions, called intercellular nanotubes, between cells of Bacillus subtilis (Fig. 3.35). B. subtilis is a Gram-positive bacterium common in soil, a highly complex environment full of diverse nutrients and antimicrobial toxins (discussed in Chapter 21). The nanotubes enable bacteria to directly share proteins and messenger RNA that encodes products useful under hostile conditions, such as exposure to antibiotics (Fig. 3.35B). Ben-Yehuda showed that two Bacillus cells encoding resistance to two different antibiotics—chloramphenicol (Cat protein) and lincomycin (Erm protein)—could share their resistance proteins and messenger RNA via nanotubes. The connected bacteria resist both antibiotics.
A similar experiment showed that even bacteria of different species can share beneficial components of cytoplasm. Christian Kost and students at Max Planck Institute for Chemical Ecology in Jena, Germany, used fluorescence microscopy to show that Escherichia coli bacteria can form nanotubes with the Gram-negative bacterium Acinetobacter baylyi. The nanotubes facilitate exchange of different amino acids between these two species. Remarkably, the nanotubes form only when the two types of cells each produce an amino acid lacking in the other. Thus, nanotubes facilitate metabolic cross-feeding.
Archaea show various kinds of intercellular nanotubes that are essential parts of the cell. Examples are found in Pyrodictium and Thermococcus species, as well as the Asgard archaeon, Prometheoarchaeum synthrophicum (see Chapter 1 opening image). For more examples, see Chapter 19.
Note: Bacterial nanotubes between cells remain a subject of controversy, because some laboratories fail to replicate their discovery, even using the same bacterial strains. In Archaea, intercellular nanotubes are more clearly documented.
Thought Question
3.11 Could two bacteria share protein complexes via nanotubes? What about hydrogen molecules (H2) as electron donors?
ANSWER ANSWER
Bacterial cells share proteins via nanotubes, such as enzymes for carbohydrate catabolism. In principle, a nanotube could be wide enough to allow transmission of ribosomes. However, nanotubes could not share dihydrogen molecules, because H2 is a gas that penetrates membranes and would escape through the nanotube walls.
SPECIAL TOPIC 3Bacteria Reach Out with Pearling Tubes and Nanopods
What if you found an intricate membrane structure like a string of pearls and had no idea what it does? Mohammed Kaplan, along with colleagues at the California Institute of Technology and several other universities, hunted for novel membrane extensions in cryo-electron tomograms (tomography slices) from 90 species of bacteria. The resolution and clarity of cryo-EM and the absence of heavy-metal stains revealed fine structures that were missed by earlier electron microscopy. Thirteen of the bacteria showed novel structures never before reported—and whose functions remain unclear (Fig. ST 3.1).
Helicobacter hepaticus is a spiral-shaped Gram-negative proteobacterium that infects the livers of mice and is a relative of the ulcer-causing human pathogen Helicobacter pylori. The tomograms of H. hepaticus showed long strings of interconnected vesicles of outer membrane, each with a round shape like pearls on a string (Fig. ST 3.1A). The function of these vesicles is not known, but similar “pearling tubes” are found in aquatic Shewanella bacteria, where they may carry electricity. Bacterial electricity and its use for fuel cells are described in Chapter 14.
A different kind of outer membrane extension was found in Myxococcus xanthus, a predatory bacterium that collects in swarms to form a fruiting body and spores. M. xanthus cells extend multiple long tubes of outer membrane (Fig. ST 3.2A). The function of these tubes is unknown, although in other microbes lengthy extensions help the cell obtain nutrients from nutrient-poor environments. Similar membrane extensions are found in Caulobacter crescentus, but its tubes are filled with S-layer subunits. The subunits are wrapped in membrane, like a sandwich in plastic wrap. These S-layer tubes are called nanopods (Fig. ST 3.2B). Because S-layer proteins generally protect a cell surface, it is puzzling to find them contained by a membrane. We do not know what substances are contained by pearling tubes, long extensions, or nanopods. We only know that the more we investigate microbial cells, the more amazing and unexpected components we find.
RESEARCH QUESTION
What experiments might you perform to reveal the function of a mysterious bacterial structure?
Kaplan, Mohammed, Georges Chreifi, Lauren A. Metskas, Janine Liedtke, Cecily R. Wood, et al. 2021. In situ imaging of bacterial membrane projections and associated protein complexes using electron cryo-tomography. Elife10:e73099.
To Summarize
The poles of a bacterial cell may differ in form and function.Caulobacter crescentus has one plain pole and one pole that has either a flagellum or a stalk. A stalked cell fissions to produce one stalked cell and one flagellar cell.
The two bacterial poles differ in age. One pole arises from the septum of the parental cell, whereas the other pole arises from a parental pole. In E. coli, successive cell divisions yield progeny with a mixture of polar ages. Cells with a very old pole may cease replication and die.
Polar aging is increased by stress. Environmental stress, such as an antibiotic or low pH, causes protein aggregates to collect at the cell’s older pole. Actinobacterial cells extend at alternating poles.
Membrane vesicles transmit cytoplasmic contents. Vesicles share proteins, nucleic acids, and other cytoplasmic contents with the exterior environment and other cells.
Intercellular nanotubes directly share cytoplasmic contents. Nanotubes between individual bacteria share drug resistance, cross-feed nutrients, and mediate electron transfer.